Detailed information of evm.model.Chr09.107 in Hemicorallium imperiale

Genomic Location: Chr09:3357689...3409599
NR annotation: XP_028396088.1, ubiquitin-protein ligase E3A-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr09.107 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q05086Ubiquitin-protein ligase E3A OS=Homo sapiens OX=9606 GN=UBE3A PE=1 SV=4
O08759Ubiquitin-protein ligase E3A OS=Mus musculus OX=10090 GN=Ube3a PE=1 SV=2
Q5U5R9Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens OX=9606 GN=HECTD2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001002 (this species only) · gene tree & orthology
Ubiquitin familyE3|E3 activity|HECT · all ubiquitin genes in this species
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01661
all species →		MacroMacro domainDomainInterproscan
PF00632
all species →		HECTHECT-domain (ubiquitin-transferase)DomainInterproscan
PF00643
all species →		zf-B_boxB-box zinc fingerDomainInterproscan
PF16558
all species →		AZULAmino-terminal Zinc-binding domain of ubiquitin ligase E3ADomainInterproscan
PF13445
all species →		zf-RING_UBOXRING-type zinc-fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002589
all species →		DomainMacro domainInterproscan
IPR000569
all species →		DomainHECT domainInterproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR043472
all species →		Homologous_superfamilyMacro domain-likeInterproscan
IPR035983
all species →		Homologous_superfamilyHECT, E3 ligase catalytic domainInterproscan
IPR042556
all species →		Homologous_superfamilyUbiquitin-protein ligase E3A, N-terminal zinc-binding domain superfamilyInterproscan
IPR000315
all species →		DomainB-box-type zinc fingerInterproscan
IPR032353
all species →		DomainUbiquitin-protein ligase E3A, N-terminal zinc-binding domainInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR044611
all species →		FamilyUbiquitin-protein ligase E3A/B/C-likeInterproscan
IPR027370
all species →		DomainZinc finger, RING-type, eukaryoticInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45700
all species →		UBIQUITIN-PROTEIN LIGASE E3CInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0000209
all species →		Biological Processprotein polyubiquitinationInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr09.107.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP