Gene detail

Detailed information of evm.model.Chr09.1145 in Hemicorallium imperiale

Genomic Location: Chr09:20361258...20367474
NR annotation: CAB3983536.1, Hypothetical predicted protein [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr09.1145 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NZM5	Ribosome biogenesis protein NOP53 OS=Homo sapiens OX=9606 GN=NOP53 PE=1 SV=2
Q8BK35	Ribosome biogenesis protein NOP53 OS=Mus musculus OX=10090 GN=Nop53 PE=1 SV=1
Q9UUI4	Ribosome biogenesis protein NOP53 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp16 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005909 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07767 all species →	Nop53	Nop53 (60S ribosomal biogenesis)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011687 all species →	Family	Ribosome biogenesis protein Nop53/GLTSCR2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14211 all species →	GLIOMA SUPPRESSOR CANDIDATE REGION GENE 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0008097 all species →	Molecular Function	5S rRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14840	NOP53, GLTSCR2; nucleolar protein 53	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.