Detailed information of evm.model.Chr09.1149 in Hemicorallium imperiale

Genomic Location: Chr09:20385341...20423968
NR annotation: XP_028396319.1, LOW QUALITY PROTEIN: usherin-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr09.1149 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O75445Usherin OS=Homo sapiens OX=9606 GN=USH2A PE=1 SV=3
Q2QI47Usherin OS=Mus musculus OX=10090 GN=Ush2A PE=1 SV=2
Q8K3K1Usherin OS=Rattus norvegicus OX=10116 GN=Ush2a PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002108 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00053
all species →		Laminin_EGFLaminin EGF domainDomainInterproscan
PF00055
all species →		Laminin_NLaminin N-terminal (Domain VI)DomainInterproscan
PF15020
all species →		CATSPERDCation channel sperm-associated protein subunit deltaFamilyInterproscan
PF13385
all species →		Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF02210
all species →		Laminin_G_2Laminin G domainDomainInterproscan
PF00041
all species →		fn3Fibronectin type III domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003961
all species →		DomainFibronectin type IIIInterproscan
IPR036116
all species →		Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR002049
all species →		DomainLaminin-type EGF domainInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR001791
all species →		DomainLaminin G domainInterproscan
IPR050713
all species →		FamilyReceptor-type Tyrosine-protein Phosphatases/UshersInterproscan
IPR008211
all species →		DomainLaminin, N-terminalInterproscan
IPR028751
all species →		FamilyCation channel sperm-associated auxiliary subunit delta/epsilonInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46957
all species →		CYTOKINE RECEPTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0036128
all species →		Cellular ComponentCatSper complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K19636USH2A; usherin-Cilium and associated proteinsko03037deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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