Detailed information of evm.model.Chr09.1167 in Hemicorallium imperiale

Genomic Location: Chr09:20550831...20553924
NR annotation: XP_028396045.1, U4/U6 small nuclear ribonucleoprotein Prp31-like [Dendronephthya gigantea]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr09.1167 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6NVP6U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis OX=8364 GN=prpf31 PE=2 SV=1
Q5U5C5U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis OX=8355 GN=prpf31 PE=2 SV=1
Q7SXM7U4/U6 small nuclear ribonucleoprotein Prp31 OS=Danio rerio OX=7955 GN=prpf31 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007795 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09785
all species →		Prp31_CPrp31 C terminal domainFamilyInterproscan
PF01798
all species →		NopsnoRNA binding domain, fibrillarinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019175
all species →		DomainPrp31 C-terminalInterproscan
IPR012976
all species →		DomainNOSICInterproscan
IPR036070
all species →		Homologous_superfamilyNop domain superfamilyInterproscan
IPR042239
all species →		Homologous_superfamilyNop, C-terminal domainInterproscan
IPR027105
all species →		FamilyU4/U6 small nuclear ribonucleoprotein Prp31Interproscan
IPR002687
all species →		DomainNop domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13904
all species →		PRE-MRNA SPLICING FACTOR PRP31Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000244
all species →		Biological Processspliceosomal tri-snRNP complex assemblyInterproscan
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005687
all species →		Cellular ComponentU4 snRNPInterproscan
GO:0046540
all species →		Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0071011
all species →		Cellular Componentprecatalytic spliceosomeInterproscan
GO:0097526
all species →		Cellular Componentspliceosomal tri-snRNP complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12844PRPF31; U4/U6 small nuclear ribonucleoprotein PRP31-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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