Genomic Location: Chr09:21903772...21914512
NR annotation: XP_028396013.1, uncharacterized protein LOC114520017 [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Chr09.1283 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q73BH8 | 2-aminoethylphosphonate--pyruvate transaminase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) OX=222523 GN=phnW PE=3 SV=1 |
| B9IUR6 | 2-aminoethylphosphonate--pyruvate transaminase OS=Bacillus cereus (strain Q1) OX=361100 GN=phnW PE=3 SV=1 |
| C3P4E3 | 2-aminoethylphosphonate--pyruvate transaminase OS=Bacillus anthracis (strain A0248) OX=592021 GN=phnW PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003299 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05406 all species → | WGR | WGR domain | Domain | Interproscan |
| PF00266 all species → | Aminotran_5 | Aminotransferase class-V | Domain | Interproscan |
| PF12937 all species → | F-box-like | F-box-like | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012703 all species → | Family | 2-aminoethylphosphonate--pyruvate transaminase | Interproscan |
| IPR008893 all species → | Domain | WGR domain | Interproscan |
| IPR015422 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, small domain | Interproscan |
| IPR036047 all species → | Homologous_superfamily | F-box-like domain superfamily | Interproscan |
| IPR015421 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, major domain | Interproscan |
| IPR001810 all species → | Domain | F-box domain | Interproscan |
| IPR000192 all species → | Domain | Aminotransferase class V domain | Interproscan |
| IPR036930 all species → | Homologous_superfamily | WGR domain superfamily | Interproscan |
| IPR015424 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42778 all species → | 2-AMINOETHYLPHOSPHONATE--PYRUVATE TRANSAMINASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0019700 all species → | Biological Process | organic phosphonate catabolic process | Interproscan |
| GO:0047304 all species → | Molecular Function | 2-aminoethylphosphonate-pyruvate transaminase activity | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
evm.model.Chr09.1283.Genes whose expression across the transcriptome samples of Hemicorallium imperiale tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hemicorallium imperiale, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
