Detailed information of evm.model.Chr09.1290 in Hemicorallium imperiale

Genomic Location: Chr09:21944782...21947171
NR annotation: CAB4010006.1, 50S ribosomal L4 [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr09.1290 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8ETY1Large ribosomal subunit protein uL4 OS=Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831) OX=221109 GN=rplD PE=3 SV=1
Q65PA6Large ribosomal subunit protein uL4 OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=rplD PE=3 SV=1
P28601Large ribosomal subunit protein uL4 OS=Geobacillus stearothermophilus OX=1422 GN=rplD PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004676 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00573
all species →		Ribosomal_L4Ribosomal protein L4/L1 familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002136
all species →		FamilyLarge ribosomal subunit protein uL4Interproscan
IPR013005
all species →		FamilyLarge ribosomal subunit protein uL4-likeInterproscan
IPR023574
all species →		Homologous_superfamilyLarge ribosomal subunit protein uL4 domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10746
all species →		50S RIBOSOMAL PROTEIN L4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →		Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840
all species →		Cellular ComponentribosomeInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02926RP-L4, MRPL4, rplD; large subunit ribosomal protein L4-Ribosomeko03011deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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