Detailed information of evm.model.Chr09.1353 in Hemicorallium imperiale

Genomic Location: Chr09:22621869...22638258
NR annotation: CAB3983775.1, Smaug homolog 1-like isoform X2 [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr09.1353 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q80XS6Protein Smaug homolog 2 OS=Mus musculus OX=10090 GN=Samd4b PE=1 SV=1
Q5PRF9Protein Smaug homolog 2 OS=Homo sapiens OX=9606 GN=SAMD4B PE=1 SV=1
Q8CBY1Protein Smaug homolog 1 OS=Mus musculus OX=10090 GN=Samd4a PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003202 (this species only)

 Pfam domain
No Pfam domain signature was detected for evm.model.Chr09.1353. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR013761
all species →		Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR037093
all species →		Homologous_superfamilySmaug, PHAT domain superfamilyInterproscan
IPR050897
all species →		FamilySMAUG/VTS1 RNA-bindingInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12515
all species →		STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0017148
all species →		Biological Processnegative regulation of translationInterproscan
GO:0030371
all species →		Molecular Functiontranslation repressor activityInterproscan
GO:0000289
all species →		Biological Processnuclear-transcribed mRNA poly(A) tail shorteningInterproscan
GO:0000932
all species →		Cellular ComponentP-bodyInterproscan
GO:0003729
all species →		Molecular FunctionmRNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K27396SMG; protein Smaug-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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