Detailed information of evm.model.Chr09.1443 in Hemicorallium imperiale

Genomic Location: Chr09:23793000...23797655
NR annotation: CAB3989749.1, visual system homeobox 1 isoform X1 [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q90277Visual system homeobox 1 OS=Carassius auratus OX=7957 GN=vsx1 PE=1 SV=1
P41935Homeobox protein ceh-10 OS=Caenorhabditis elegans OX=6239 GN=ceh-10 PE=1 SV=1
O42250Visual system homeobox 1 OS=Danio rerio OX=7955 GN=vsx1 PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyHomeobox

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR052294FamilyVisual system homeobox transcriptional regulatorsInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR023339DomainCVC domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46892VISUAL SYSTEM HOMEOBOX 2Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:1990837Molecular Functionsequence-specific double-stranded DNA bindingInterproscan

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