Detailed information of evm.model.Chr09.741 in Hemicorallium imperiale

Genomic Location: Chr09:15853261...15889215
NR annotation: CAB4004295.1, splicing factor 3B subunit 2-like [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr09.741 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3UJB0Splicing factor 3B subunit 2 OS=Mus musculus OX=10090 GN=Sf3b2 PE=2 SV=1
Q13435Splicing factor 3B subunit 2 OS=Homo sapiens OX=9606 GN=SF3B2 PE=1 SV=2
Q8BGF3Dynein axonemal assembly factor 10 OS=Mus musculus OX=10090 GN=Dnaaf10 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004489 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04046
all species →		PSPPSPFamilyInterproscan
PF15140
all species →		DUF4573Domain of unknown function (DUF4573)FamilyInterproscan
PF04037
all species →		DUF382Domain of unknown function (DUF382) FamilyInterproscan
PF02037
all species →		SAPSAP domainDomainInterproscan
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006568
all species →		DomainPSP, proline-richInterproscan
IPR027856
all species →		FamilyProtein of unknown function DUF4573Interproscan
IPR003034
all species →		DomainSAP domainInterproscan
IPR052584
all species →		FamilyPre-mRNA Spliceosomal U2 snRNP Complex ComponentInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR036361
all species →		Homologous_superfamilySAP domain superfamilyInterproscan
IPR007180
all species →		DomainDomain of unknown function DUF382Interproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12785
all species →		SPLICING FACTOR 3BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005689
all species →		Cellular ComponentU12-type spliceosomal complexInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr09.741.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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