Detailed information of evm.model.Chr09.741 in Hemicorallium imperiale

Genomic Location: Chr09:15853261...15889215
NR annotation: CAB4004295.1, splicing factor 3B subunit 2-like [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q3UJB0Splicing factor 3B subunit 2 OS=Mus musculus OX=10090 GN=Sf3b2 PE=2 SV=1
Q13435Splicing factor 3B subunit 2 OS=Homo sapiens OX=9606 GN=SF3B2 PE=1 SV=2
Q8BGF3Dynein axonemal assembly factor 10 OS=Mus musculus OX=10090 GN=Dnaaf10 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04046PSPPSPFamilyInterproscan
PF15140DUF4573Domain of unknown function (DUF4573)FamilyInterproscan
PF04037DUF382Domain of unknown function (DUF382) FamilyInterproscan
PF02037SAPSAP domainDomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006568DomainPSP, proline-richInterproscan
IPR027856FamilyProtein of unknown function DUF4573Interproscan
IPR003034DomainSAP domainInterproscan
IPR052584FamilyPre-mRNA Spliceosomal U2 snRNP Complex ComponentInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR036361Homologous_superfamilySAP domain superfamilyInterproscan
IPR007180DomainDomain of unknown function DUF382Interproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12785SPLICING FACTOR 3BInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005689Cellular ComponentU12-type spliceosomal complexInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan

TOP