Detailed information of evm.model.Chr09.846 in Hemicorallium imperiale

Genomic Location: Chr09:17434520...17455404
NR annotation: XP_028417684.1, poly(A) polymerase type 3-like isoform X1 [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr09.846 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P25500Poly(A) polymerase alpha OS=Bos taurus OX=9913 GN=PAPOLA PE=1 SV=3
P51003Poly(A) polymerase alpha OS=Homo sapiens OX=9606 GN=PAPOLA PE=1 SV=4
Q61183Poly(A) polymerase alpha OS=Mus musculus OX=10090 GN=Papola PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001969 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04928
all species →		PAP_centralPoly(A) polymerase central domainDomainInterproscan
PF20750
all species →		PAP_NTPasePoly(A) polymerase nucleotidyltransferase domainDomainInterproscan
PF04926
all species →		PAP_RNA-bindPoly(A) polymerase predicted RNA binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043519
all species →		Homologous_superfamilyNucleotidyltransferase superfamilyInterproscan
IPR007012
all species →		DomainPoly(A) polymerase, central domainInterproscan
IPR048840
all species →		DomainPoly(A) polymerase, nucleotidyltransferase domainInterproscan
IPR011068
all species →		Homologous_superfamilyNucleotidyltransferase, class I-like, C-terminalInterproscan
IPR007010
all species →		DomainPoly(A) polymerase, RNA-binding domainInterproscan
IPR014492
all species →		FamilyPoly(A) polymeraseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10682
all species →		POLY A POLYMERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:1990817
all species →		Molecular Functionpoly(A) RNA polymerase activityInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0016779
all species →		Molecular Functionnucleotidyltransferase activityInterproscan
GO:0031123
all species →		Biological ProcessRNA 3'-end processingInterproscan
GO:0004652
all species →		Molecular Functionobsolete polynucleotide adenylyltransferase activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006378
all species →		Biological Processobsolete mRNA polyadenylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14376PAP; poly(A) polymeraseEC:2.7.7.19
Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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