Detailed information of evm.model.Chr09.930 in Hemicorallium imperiale

Genomic Location: Chr09:18387255...18393148
NR annotation: CAB3995701.1, tyrosyl-DNA phosphodiesterase 1-like [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr09.930 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8BJ37Tyrosyl-DNA phosphodiesterase 1 OS=Mus musculus OX=10090 GN=Tdp1 PE=1 SV=2
Q4G056Tyrosyl-DNA phosphodiesterase 1 OS=Rattus norvegicus OX=10116 GN=Tdp1 PE=1 SV=1
Q9NUW8Tyrosyl-DNA phosphodiesterase 1 OS=Homo sapiens OX=9606 GN=TDP1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003551 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10283
all species →		zf-CCHHPBZ domainDomainInterproscan
PF06087
all species →		Tyr-DNA_phosphoTyrosyl-DNA phosphodiesteraseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019406
all species →		DomainAprataxin and PNK-like factor, PBZ domainInterproscan
IPR010347
all species →		FamilyTyrosyl-DNA phosphodiesterase IInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12415
all species →		TYROSYL-DNA PHOSPHODIESTERASE 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0008081
all species →		Molecular Functionphosphoric diester hydrolase activityInterproscan
GO:0003690
all species →		Molecular Functiondouble-stranded DNA bindingInterproscan
GO:0003697
all species →		Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0017005
all species →		Molecular Function3'-tyrosyl-DNA phosphodiesterase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10862TDP1; tyrosyl-DNA phosphodiesterase 1EC:3.1.4.-
DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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