Detailed information of evm.model.Chr10.143 in Hemicorallium imperiale

Genomic Location: Chr10:4104901...4159511
NR annotation: CAB3993967.1, DNA polymerase theta-like [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O75417DNA polymerase theta OS=Homo sapiens OX=9606 GN=POLQ PE=1 SV=2
Q8CGS6DNA polymerase theta OS=Mus musculus OX=10090 GN=Polq PE=1 SV=2
O18475DNA polymerase theta OS=Drosophila melanogaster OX=7227 GN=PolQ PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21099POLQ_helicalDNA_pol_Q helicase like region helical domainDomainInterproscan
PF04739AMPKBI5'-AMP-activated protein kinase beta subunit, interaction domainFamilyInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00476DNA_pol_ADNA polymerase family AFamilyInterproscan
PF16561AMPK1_CBMGlycogen recognition site of AMP-activated protein kinaseFamilyInterproscan
PF00612IQIQ calmodulin-binding motifMotifInterproscan
PF20470HTH_61Helix-turn-helix domainDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR048960DomainPOLQ-like, helical domainInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR006828DomainAssociation with the SNF1 complex (ASC) domainInterproscan
IPR000048Binding_siteIQ motif, EF-hand binding siteInterproscan
IPR001098DomainDNA-directed DNA polymerase, family A, palm domainInterproscan
IPR019760Conserved_siteDNA-directed DNA polymerase, family A, conserved siteInterproscan
IPR002298FamilyDNA polymerase AInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR032640DomainAMP-activated protein kinase, glycogen-binding domainInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR014756Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR046931DomainDNA polymerase theta-like, helix-turn-helix domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR037256Homologous_superfamilyASC domain superfamilyInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10133DNA POLYMERASE IInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003887Molecular FunctionDNA-directed DNA polymerase activityInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan
GO:0006261Biological ProcessDNA-templated DNA replicationInterproscan
GO:0006302Biological Processdouble-strand break repairInterproscan
GO:0097681Biological Processdouble-strand break repair via alternative nonhomologous end joiningInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02349POLQ; DNA polymerase thetaEC:2.7.7.7
DNA repair and recombination proteinsko03400deepkoala

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