Gene detail

Detailed information of evm.model.Chr10.154 in Hemicorallium imperiale

Genomic Location: Chr10:4536947...4537303
NR annotation: XP_046847716.1, U7 snRNA-associated Sm-like protein LSm10 [Xenia sp. Carnegie-2017]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr10.154 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q969L4	U7 snRNA-associated Sm-like protein LSm10 OS=Homo sapiens OX=9606 GN=LSM10 PE=1 SV=1
Q8QZX5	U7 snRNA-associated Sm-like protein LSm10 OS=Mus musculus OX=10090 GN=Lsm10 PE=1 SV=1
Q54F84	Putative uncharacterized protein DDB_G0291015 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0291015 PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010077 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01423 all species →	LSM	LSM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001163 all species →	Domain	Sm domain, eukaryotic/archaea-type	Interproscan
IPR010920 all species →	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR047575 all species →	Domain	Sm domain	Interproscan
IPR052840 all species →	Family	U7 snRNA-associated Sm-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21196 all species →	U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006398 all species →	Biological Process	mRNA 3'-end processing by stem-loop binding and cleavage	Interproscan
GO:0016604 all species →	Cellular Component	nuclear body	Interproscan
GO:0071208 all species →	Molecular Function	histone pre-mRNA DCP binding	Interproscan
GO:0071209 all species →	Molecular Function	U7 snRNA binding	Interproscan
GO:0071254 all species →	Cellular Component	cytoplasmic U snRNP body	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25591	LSM10; U7 snRNA-associated Sm-like protein LSm10	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.