Detailed information of evm.model.Chr10.202 in Hemicorallium imperiale

Genomic Location: Chr10:5467560...5478463
NR annotation: CAB4000235.1, pentatricopeptide repeat-containing At3g02650, mitochondrial [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr10.202 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9UMY4Sorting nexin-12 OS=Homo sapiens OX=9606 GN=SNX12 PE=1 SV=4
Q1RMH8Sorting nexin-3 OS=Bos taurus OX=9913 GN=SNX3 PE=2 SV=3
O60493Sorting nexin-3 OS=Homo sapiens OX=9606 GN=SNX3 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001029 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00787
all species →		PXPX domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036871
all species →		Homologous_superfamilyPX domain superfamilyInterproscan
IPR002885
all species →		RepeatPentatricopeptide repeatInterproscan
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR036855
all species →		Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR000571
all species →		DomainZinc finger, CCCH-typeInterproscan
IPR001683
all species →		DomainPhox homologyInterproscan
IPR051074
all species →		FamilySorting NexinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45963
all species →		RE52028PInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0035091
all species →		Molecular Functionphosphatidylinositol bindingInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan
GO:0030904
all species →		Cellular Componentretromer complexInterproscan
GO:0031901
all species →		Cellular Componentearly endosome membraneInterproscan
GO:0032266
all species →		Molecular Functionphosphatidylinositol-3-phosphate bindingInterproscan
GO:0032456
all species →		Biological Processendocytic recyclingInterproscan
GO:0034499
all species →		Biological Processlate endosome to Golgi transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr10.202.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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