Gene detail

Detailed information of evm.model.Chr10.297 in Hemicorallium imperiale

Genomic Location: Chr10:7381646...7474738
NR annotation: XP_046848607.1, utrophin-like isoform X2 [Xenia sp. Carnegie-2017]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
E1C231	E3 ubiquitin-protein ligase listerin OS=Gallus gallus OX=9031 GN=LTN1 PE=3 SV=1
Q6A009	E3 ubiquitin-protein ligase listerin OS=Mus musculus OX=10090 GN=Ltn1 PE=1 SV=3
O94822	E3 ubiquitin-protein ligase listerin OS=Homo sapiens OX=9606 GN=LTN1 PE=1 SV=6

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00435	Spectrin	Spectrin repeat	Domain	Interproscan
PF00307	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018159	Repeat	Spectrin/alpha-actinin	Interproscan
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR001715	Domain	Calponin homology domain	Interproscan
IPR039795	Family	E3 ubiquitin-protein ligase listerin	Interproscan
IPR002017	Repeat	Spectrin repeat	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12389	ZINC FINGER PROTEIN 294	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0043023	Molecular Function	ribosomal large subunit binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0072344	Biological Process	rescue of stalled ribosome	Interproscan
GO:1990112	Cellular Component	RQC complex	Interproscan
GO:1990116	Biological Process	ribosome-associated ubiquitin-dependent protein catabolic process	Interproscan