Gene detail

Detailed information of evm.model.Chr10.517 in Hemicorallium imperiale

Genomic Location: Chr10:9942520...9944435
NR annotation: XP_028414218.1, POU domain, class 3, transcription factor 4-B-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr10.517 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P56224	POU domain, class 3, transcription factor 3-A OS=Danio rerio OX=7955 GN=pou3f3a PE=2 SV=2
Q17237	Silk gland factor 3 OS=Bombyx mori OX=7091 GN=SGF3 PE=2 SV=1
P16241	POU domain protein CF1A OS=Drosophila melanogaster OX=7227 GN=vvl PE=2 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001851 (this species only)
Transcription factor family	Homeobox · all TF in this species
Transcription factor family	Pou · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00157 all species →	Pou	Pou domain - N-terminal to homeobox domain	Domain	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010982 all species →	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR000327 all species →	Domain	POU-specific domain	Interproscan
IPR050255 all species →	Family	POU domain transcription factor	Interproscan
IPR013847 all species →	Domain	POU domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11636 all species →	POU DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09365	POU3F, OTF; POU domain transcription factor, class 3	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.