Gene detail

Detailed information of evm.model.Chr10.518 in Hemicorallium imperiale

Genomic Location: Chr10:9947943...9953544
NR annotation: XP_046848408.1, 40S ribosomal protein S4-like [Xenia sp. Carnegie-2017]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr10.518 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90YS0	Small ribosomal subunit protein eS4 OS=Ictalurus punctatus OX=7998 GN=rps4 PE=2 SV=3
P47836	Small ribosomal subunit protein eS4 OS=Gallus gallus OX=9031 GN=RPS4 PE=1 SV=2
P47961	Small ribosomal subunit protein eS4 OS=Cricetulus griseus OX=10029 GN=RPS4 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006633 (this species only)
Transcription factor family	Pou · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08071 all species →	RS4NT	RS4NT (NUC023) domain	Domain	Interproscan
PF00157 all species →	Pou	Pou domain - N-terminal to homeobox domain	Domain	Interproscan
PF00900 all species →	Ribosomal_S4e	Ribosomal family S4e	Family	Interproscan
PF16121 all species →	40S_S4_C	40S ribosomal protein S4 C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013847 all species →	Domain	POU domain	Interproscan
IPR013843 all species →	Domain	Small ribosomal subunit protein eS4, N-terminal	Interproscan
IPR010982 all species →	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR036986 all species →	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan
IPR000327 all species →	Domain	POU-specific domain	Interproscan
IPR041982 all species →	Domain	Small ribosomal subunit protein eS4, KOW domain	Interproscan
IPR002942 all species →	Domain	RNA-binding S4 domain	Interproscan
IPR013845 all species →	Domain	Small ribosomal subunit protein eS4, central region	Interproscan
IPR000876 all species →	Family	Small ribosomal subunit protein eS4	Interproscan
IPR018199 all species →	Conserved_site	Small ribosomal subunit protein eS4, N-terminal, conserved site	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR038237 all species →	Homologous_superfamily	Small ribosomal subunit protein eS4, central domain superfamily	Interproscan
IPR032277 all species →	Domain	Small ribosomal subunit protein eS4, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11581 all species →	30S/40S RIBOSOMAL PROTEIN S4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02987	RP-S4e, RPS4; small subunit ribosomal protein S4e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.