Gene detail

Detailed information of evm.model.Chr10.518 in Hemicorallium imperiale

Genomic Location: Chr10:9947943...9953544
NR annotation: XP_046848408.1, 40S ribosomal protein S4-like [Xenia sp. Carnegie-2017]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q90YS0	Small ribosomal subunit protein eS4 OS=Ictalurus punctatus OX=7998 GN=rps4 PE=2 SV=3
P47836	Small ribosomal subunit protein eS4 OS=Gallus gallus OX=9031 GN=RPS4 PE=1 SV=2
P47961	Small ribosomal subunit protein eS4 OS=Cricetulus griseus OX=10029 GN=RPS4 PE=2 SV=2

Gene family	Subfamily
Transcription Factors Family	Pou

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08071	RS4NT	RS4NT (NUC023) domain	Domain	Interproscan
PF00157	Pou	Pou domain - N-terminal to homeobox domain	Domain	Interproscan
PF00900	Ribosomal_S4e	Ribosomal family S4e	Family	Interproscan
PF16121	40S_S4_C	40S ribosomal protein S4 C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013847	Domain	POU domain	Interproscan
IPR013843	Domain	Small ribosomal subunit protein eS4, N-terminal	Interproscan
IPR010982	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR036986	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan
IPR000327	Domain	POU-specific domain	Interproscan
IPR041982	Domain	Small ribosomal subunit protein eS4, KOW domain	Interproscan
IPR002942	Domain	RNA-binding S4 domain	Interproscan
IPR013845	Domain	Small ribosomal subunit protein eS4, central region	Interproscan
IPR000876	Family	Small ribosomal subunit protein eS4	Interproscan
IPR018199	Conserved_site	Small ribosomal subunit protein eS4, N-terminal, conserved site	Interproscan
IPR014722	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR038237	Homologous_superfamily	Small ribosomal subunit protein eS4, central domain superfamily	Interproscan
IPR032277	Domain	Small ribosomal subunit protein eS4, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11581	30S/40S RIBOSOMAL PROTEIN S4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0022627	Cellular Component	cytosolic small ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02987	RP-S4e, RPS4; small subunit ribosomal protein S4e	-	Ribosome	ko03011	deepkoala