Detailed information of evm.model.Chr10.600 in Hemicorallium imperiale

Genomic Location: Chr10:12173789...12252530
NR annotation: XP_028414575.1, mediator of RNA polymerase II transcription subunit 23-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr10.600 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6P423Mediator of RNA polymerase II transcription subunit 23 OS=Xenopus laevis OX=8355 GN=med23 PE=2 SV=1
Q5EB59Mediator of RNA polymerase II transcription subunit 23 OS=Rattus norvegicus OX=10116 GN=Med23 PE=2 SV=2
Q80YQ2Mediator of RNA polymerase II transcription subunit 23 OS=Mus musculus OX=10090 GN=Med23 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003031 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21524
all species →		SAMD1_WHSAM domain-containing protein 1, WH domainDomainInterproscan
PF00439
all species →		BromodomainBromodomainDomainInterproscan
PF00855
all species →		PWWPPWWP domainDomainInterproscan
PF11573
all species →		Med23Mediator complex subunit 23FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR036427
all species →		Homologous_superfamilyBromodomain-like superfamilyInterproscan
IPR048589
all species →		DomainSAM domain-containing protein 1-like, WH domainInterproscan
IPR021629
all species →		FamilyMediator complex, subunit Med23Interproscan
IPR001487
all species →		DomainBromodomainInterproscan
IPR019787
all species →		DomainZinc finger, PHD-fingerInterproscan
IPR001965
all species →		DomainZinc finger, PHD-typeInterproscan
IPR000313
all species →		DomainPWWP domainInterproscan
IPR019786
all species →		Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR002893
all species →		DomainZinc finger, MYND-typeInterproscan
IPR047268
all species →		DomainZinc finger MYND domain-containing protein 11, PWWP domainInterproscan
IPR011011
all species →		Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12691
all species →		MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0005667
all species →		Cellular Componenttranscription regulator complexInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0010628
all species →		Biological Processpositive regulation of gene expressionInterproscan
GO:0016592
all species →		Cellular Componentmediator complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr10.600.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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