Detailed information of evm.model.Chr10.705 in Hemicorallium imperiale

Genomic Location: Chr10:15663178...15682917
NR annotation: XP_028414525.1, cytoplasmic tRNA 2-thiolation protein 1-like [Dendronephthya gigantea]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr10.705 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q803X1Cytoplasmic tRNA 2-thiolation protein 1 OS=Danio rerio OX=7955 GN=ctu1 PE=2 SV=1
B4HSL7Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosophila sechellia OX=7238 GN=GM20632 PE=3 SV=1
B4LM02Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosophila virilis OX=7244 GN=GJ21203 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004606 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01171
all species →		ATP_bind_3PP-loop familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011063
all species →		DomaintRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminalInterproscan
IPR020554
all species →		Conserved_siteUncharacterised protein family UPF0021, conserved siteInterproscan
IPR014729
all species →		Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11807
all species →		ATPASES OF THE PP SUPERFAMILY-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000049
all species →		Molecular FunctiontRNA bindingInterproscan
GO:0002143
all species →		Biological ProcesstRNA wobble position uridine thiolationInterproscan
GO:0002144
all species →		Cellular Componentcytosolic tRNA wobble base thiouridylase complexInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14168CTU1, NCS6; cytoplasmic tRNA 2-thiolation protein 1EC:2.7.7.-
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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