Gene detail

Detailed information of evm.model.Chr11.281 in Hemicorallium imperiale

Genomic Location: Chr11:5731364...5734452
NR annotation: XP_028395422.1, transcription elongation factor, mitochondrial-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr11.281 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0P4D6	Transcription elongation factor, mitochondrial OS=Danio rerio OX=7955 GN=tefm PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008563 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12836 all species →	HHH_3	Helix-hairpin-helix motif	Domain	Interproscan
PF09159 all species →	Ydc2-catalyt	Mitochondrial resolvase Ydc2 / RNA splicing MRS1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039150 all species →	Family	Transcription elongation factor, mitochondrial	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR015242 all species →	Domain	Mitochondrial resolvase Ydc2, catalytic	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR010994 all species →	Homologous_superfamily	RuvA domain 2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21053 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006390 all species →	Biological Process	mitochondrial transcription	Interproscan
GO:0006392 all species →	Biological Process	transcription elongation by mitochondrial RNA polymerase	Interproscan
GO:0030337 all species →	Molecular Function	DNA polymerase processivity factor activity	Interproscan
GO:0042645 all species →	Cellular Component	mitochondrial nucleoid	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17658	TEFM; transcription elongation factor, mitochondrial	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.