Gene detail

Detailed information of evm.model.Chr11.443 in Hemicorallium imperiale

Genomic Location: Chr11:8677592...8797446
NR annotation: XP_028417313.1, fas-binding factor 1 homolog [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr11.443 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VMW9	GDP-mannose 4,6 dehydratase OS=Drosophila melanogaster OX=7227 GN=Gmd PE=1 SV=2
O60547	GDP-mannose 4,6 dehydratase OS=Homo sapiens OX=9606 GN=GMDS PE=1 SV=1
Q8K0C9	GDP-mannose 4,6 dehydratase OS=Mus musculus OX=10090 GN=Gmds PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003533 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16363 all species →	GDP_Man_Dehyd	GDP-mannose 4,6 dehydratase	Domain	Interproscan
PF12923 all species →	RRP7	Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain	Domain	Interproscan
PF21007 all species →	FBF1	Fas-binding factor 1	Coiled-coil	Interproscan
PF03736 all species →	EPTP	EPTP domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR006368 all species →	Family	GDP-mannose 4,6-dehydratase	Interproscan
IPR009039 all species →	Repeat	EAR	Interproscan
IPR011048 all species →	Homologous_superfamily	Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily	Interproscan
IPR016040 all species →	Domain	NAD(P)-binding domain	Interproscan
IPR034890 all species →	Domain	Rrp7A, RNA recognition motif	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR024326 all species →	Domain	Ribosomal RNA-processing protein 7, C-terminal domain	Interproscan
IPR049390 all species →	Domain	Fas-binding factor 1, C-terminal	Interproscan
IPR005492 all species →	Repeat	Leucine-rich glioma-inactivated , EPTP repeat	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43715 all species →	GDP-MANNOSE 4,6-DEHYDRATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008446 all species →	Molecular Function	GDP-mannose 4,6-dehydratase activity	Interproscan
GO:0019673 all species →	Biological Process	GDP-mannose metabolic process	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10779	ATRX; transcriptional regulator ATRX	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.