Detailed information of evm.model.Chr11.670 in Hemicorallium imperiale

Genomic Location: Chr11:11378609...11385492
NR annotation: CAB4015952.1, protocadherin Fat 4-like [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr11.670 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A6NMZ7Collagen alpha-6(VI) chain OS=Homo sapiens OX=9606 GN=COL6A6 PE=1 SV=2
A6H584Collagen alpha-5(VI) chain OS=Mus musculus OX=10090 GN=Col6a5 PE=1 SV=4
Q8C6K9Collagen alpha-6(VI) chain OS=Mus musculus OX=10090 GN=Col6a6 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007916 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00092
all species →		VWAvon Willebrand factor type A domainDomainInterproscan
PF16754
all species →		PesticinBacterial toxin homologue of phage lysozyme, C-termDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002035
all species →		Domainvon Willebrand factor, type AInterproscan
IPR036465
all species →		Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR050525
all species →		FamilyExtracellular Matrix Assembly and OrganizationInterproscan
IPR031922
all species →		DomainPesticin, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24020
all species →		COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003796
all species →		Molecular Functionlysozyme activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr11.670.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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