Gene detail

Detailed information of evm.model.Chr12.298 in Hemicorallium imperiale

Genomic Location: Chr12:8830910...8937527
NR annotation: XP_028399036.1, C-myc promoter-binding protein-like [Dendronephthya gigantea]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr12.298 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z401	C-myc promoter-binding protein OS=Homo sapiens OX=9606 GN=DENND4A PE=1 SV=2
Q5VZ89	DENN domain-containing protein 4C OS=Homo sapiens OX=9606 GN=DENND4C PE=1 SV=3
Q3U1Y4	DENN domain-containing protein 4B OS=Mus musculus OX=10090 GN=Dennd4b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003081 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13041 all species →	PPR_2	PPR repeat family	Repeat	Interproscan
PF03455 all species →	dDENN	dDENN domain	Domain	Interproscan
PF02141 all species →	DENN	DENN (AEX-3) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037516 all species →	Domain	Tripartite DENN domain	Interproscan
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan
IPR005112 all species →	Domain	dDENN domain	Interproscan
IPR001194 all species →	Domain	cDENN domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR011049 all species →	Homologous_superfamily	Serralysin-like metalloprotease, C-terminal	Interproscan
IPR051696 all species →	Family	DENN Domain-Containing GEFs	Interproscan
IPR043153 all species →	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12296 all species →	DENN DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0032483 all species →	Biological Process	regulation of Rab protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Chr12.298.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.