Gene detail

Detailed information of evm.model.Chr12.512 in Hemicorallium imperiale

Genomic Location: Chr12:12669724...12694440
NR annotation: XP_046856131.1, LOW QUALITY PROTEIN: activating signal cointegrator 1-like [Xenia sp. Carnegie-2017]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr12.512 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15650	Activating signal cointegrator 1 OS=Homo sapiens OX=9606 GN=TRIP4 PE=1 SV=4
Q9QXN3	Activating signal cointegrator 1 OS=Mus musculus OX=10090 GN=Trip4 PE=1 SV=2
A4UTP7	Myocyte-specific enhancer factor 2C OS=Sus scrofa OX=9823 GN=MEF2C PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007434 (this species only)
Transcription factor family	SRF · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00319 all species →	SRF-TF	SRF-type transcription factor (DNA-binding and dimerisation domain)	Domain	Interproscan
PF04266 all species →	ASCH	ASCH domain	Domain	Interproscan
PF12347 all species →	HJURP_C	Holliday junction regulator protein family C-terminal repeat	Domain	Interproscan
PF06221 all species →	zf-C2HC5	Putative zinc finger motif, C2HC5-type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036879 all species →	Homologous_superfamily	Transcription factor, MADS-box superfamily	Interproscan
IPR033896 all species →	Domain	MADS MEF2-like	Interproscan
IPR002100 all species →	Domain	Transcription factor, MADS-box	Interproscan
IPR007374 all species →	Domain	ASCH domain	Interproscan
IPR039128 all species →	Family	Activating signal cointegrator 1-like	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR022102 all species →	Domain	Holliday junction regulator protein family C-terminal	Interproscan
IPR009349 all species →	Domain	TRIP4/RQT4, C2HC5-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12963 all species →	THYROID RECEPTOR INTERACTING PROTEIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0072344 all species →	Biological Process	rescue of stalled ribosome	Interproscan
GO:0180022 all species →	Cellular Component	RQC-trigger complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23398	TRIP4; activating signal cointegrator 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.