Gene detail

Detailed information of evm.model.Chr12.857 in Hemicorallium imperiale

Genomic Location: Chr12:18073812...18088425
NR annotation: CAB3984478.1, cartilage oligomeric matrix, partial [Paramuricea clavata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q9R0G6	Cartilage oligomeric matrix protein OS=Mus musculus OX=10090 GN=Comp PE=1 SV=2
P49747	Cartilage oligomeric matrix protein OS=Homo sapiens OX=9606 GN=COMP PE=1 SV=2
P35445	Cartilage oligomeric matrix protein OS=Bos taurus OX=9913 GN=COMP PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02412	TSP_3	Thrombospondin type 3 repeat	Domain	Interproscan
PF05735	TSP_C	Thrombospondin C-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003367	Repeat	Thrombospondin, type 3-like repeat	Interproscan
IPR008859	Domain	Thrombospondin, C-terminal	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR017897	Repeat	Thrombospondin, type 3 repeat	Interproscan
IPR028974	Homologous_superfamily	TSP type-3 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10199	THROMBOSPONDIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04659	THBS2S; thrombospondin 2/3/4/5	-	Glycosaminoglycan binding proteins	ko00536	deepkoala