Detailed information of evm.model.Chr12.960 in Hemicorallium imperiale

Genomic Location: Chr12:20701061...20735751
NR annotation: CAB3984471.1, Threonine--tRNA ligase, cytoplasmic [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q3ZBV8Threonine--tRNA ligase 1, cytoplasmic OS=Bos taurus OX=9913 GN=TARS1 PE=2 SV=1
Q5XHY5Threonine--tRNA ligase 1, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Tars1 PE=1 SV=1
Q9D0R2Threonine--tRNA ligase 1, cytoplasmic OS=Mus musculus OX=10090 GN=Tars1 PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyESR-like
Transcription Factors FamilyMiscellaneous
Transcription Factors FamilyNGFIB-like
Transcription Factors FamilyRXR-like
Transcription Factors FamilyTHR-like
Transcription Factors FamilyGCNF-like

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00587tRNA-synt_2btRNA synthetase class II core domain (G, H, P, S and T)DomainInterproscan
PF03129HGTP_anticodonAnticodon binding domainDomainInterproscan
PF07973tRNA_SADThreonyl and Alanyl tRNA synthetase second additional domainDomainInterproscan
PF00104Hormone_recepLigand-binding domain of nuclear hormone receptorDomainInterproscan
PF00105zf-C4Zinc finger, C4 type (two domains)DomainInterproscan
PF02824TGSTGS domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002314DomainAminoacyl-tRNA synthetase, class II (G/ P/ S/T)Interproscan
IPR006195DomainAminoacyl-tRNA synthetase, class IIInterproscan
IPR002320FamilyThreonine-tRNA ligase, class IIaInterproscan
IPR004154DomainAnticodon-bindingInterproscan
IPR013088Homologous_superfamilyZinc finger, NHR/GATA-typeInterproscan
IPR012676Homologous_superfamilyTGS-likeInterproscan
IPR045864Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan
IPR018163Homologous_superfamilyThreonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamilyInterproscan
IPR001628DomainZinc finger, nuclear hormone receptor-typeInterproscan
IPR012675Homologous_superfamilyBeta-grasp domain superfamilyInterproscan
IPR035500Homologous_superfamilyNuclear hormone receptor-like domain superfamilyInterproscan
IPR000536DomainNuclear hormone receptor, ligand-binding domainInterproscan
IPR033728DomainThreonine-tRNA ligase catalytic core domainInterproscan
IPR012947DomainThreonyl/alanyl tRNA synthetase, SADInterproscan
IPR004095DomainTGSInterproscan
IPR036621Homologous_superfamilyAnticodon-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11451THREONINE-TRNA LIGASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000166Molecular Functionnucleotide bindingInterproscan
GO:0004812Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006418Biological ProcesstRNA aminoacylation for protein translationInterproscan
GO:0004829Molecular Functionthreonine-tRNA ligase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006435Biological Processthreonyl-tRNA aminoacylationInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0043039Biological ProcesstRNA aminoacylationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01868TARS, thrS; threonyl-tRNA synthetaseEC:6.1.1.3
Transfer RNA biogenesisko03016deepkoala

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