Detailed information of evm.model.Chr12.969 in Hemicorallium imperiale

Genomic Location: Chr12:21008135...21009179
NR annotation: CAB4022684.1, Amyloid beta A4 precursor -binding family A member 1, partial, partial [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr12.969 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O17583Protein lin-10 OS=Caenorhabditis elegans OX=6239 GN=lin-10 PE=1 SV=1
Q99767Amyloid-beta A4 precursor protein-binding family A member 2 OS=Homo sapiens OX=9606 GN=APBA2 PE=1 SV=3
Q5RD33Amyloid-beta A4 precursor protein-binding family A member 2 OS=Pongo abelii OX=9601 GN=APBA2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002950 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00595
all species →
PDZPDZ domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001478
all species →
DomainPDZ domainInterproscan
IPR051230
all species →
FamilyAmyloid-beta A4 Precursor Protein-BindingInterproscan
IPR036034
all species →
Homologous_superfamilyPDZ superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12345
all species →
SYNTENIN RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0007268
all species →
Biological Processchemical synaptic transmissionInterproscan
GO:0043197
all species →
Cellular Componentdendritic spineInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr12.969.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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