Gene detail

Detailed information of evm.model.Chr13.149 in Hemicorallium imperiale

Genomic Location: Chr13:2056533...2063466
NR annotation: XP_046858478.1, uridylate-specific endoribonuclease B-like [Xenia sp. Carnegie-2017]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr13.149 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q503V9	Uridylate-specific endoribonuclease B OS=Danio rerio OX=7955 GN=endoub PE=2 SV=1
B1WBB4	Poly(U)-specific endoribonuclease-B OS=Xenopus laevis OX=8355 GN=endou-b PE=2 SV=1
B1H3D5	Poly(U)-specific endoribonuclease OS=Xenopus tropicalis OX=8364 GN=endou PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001018 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09412 all species →	XendoU	Endoribonuclease XendoU	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037227 all species →	Homologous_superfamily	Endoribonuclease EndoU-like	Interproscan
IPR018998 all species →	Domain	EndoU ribonuclease, C-terminal	Interproscan
IPR039787 all species →	Family	Poly(U)-specific endoribonuclease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12439 all species →	PLACENTAL PROTEIN 11-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14648	ENDOU, PP11; poly(U)-specific endoribonuclease	EC:3.1.-.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.