Gene detail

Detailed information of evm.model.Chr13.3 in Hemicorallium imperiale

Genomic Location: Chr13:8136...9071
NR annotation: NRB40797.1, ribosome biogenesis GTPase YlqF [Pseudomonadales bacterium]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr13.3 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C5D8U8	Ribosome biogenesis GTPase A OS=Geobacillus sp. (strain WCH70) OX=471223 GN=rbgA PE=3 SV=1
D5DJL5	Ribosome biogenesis GTPase A OS=Priestia megaterium (strain DSM 319 / IMG 1521) OX=592022 GN=rbgA PE=3 SV=1
B7GGD6	Ribosome biogenesis GTPase A OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) OX=491915 GN=rbgA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004030 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926 all species →	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006073 all species →	Domain	GTP binding domain	Interproscan
IPR019991 all species →	Family	GTP-binding protein, ribosome biogenesis	Interproscan
IPR016478 all species →	Family	GTPase, MTG1	Interproscan
IPR023179 all species →	Homologous_superfamily	GTP-binding protein, orthogonal bundle domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45782 all species →	MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14540	rbgA; ribosome biogenesis GTPase A	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.