Detailed information of evm.model.Chr13.31 in Hemicorallium imperiale

Genomic Location: Chr13:254451...274888
NR annotation: CAB4003308.1, Nuclear pore complex Nup153 [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q3ZBT5Syntaxin-7 OS=Bos taurus OX=9913 GN=STX7 PE=2 SV=1
O15400Syntaxin-7 OS=Homo sapiens OX=9606 GN=STX7 PE=1 SV=4
P49790Nuclear pore complex protein Nup153 OS=Homo sapiens OX=9606 GN=NUP153 PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyUBD|ZnF|NZF

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14523Syntaxin_2Syntaxin-like proteinDomainInterproscan
PF05739SNARESNARE domainFamilyInterproscan
PF00641zf-RanBPZn-finger in Ran binding protein and othersDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036443Homologous_superfamilyZinc finger, RanBP2-type superfamilyInterproscan
IPR001876DomainZinc finger, RanBP2-typeInterproscan
IPR006011DomainSyntaxin, N-terminal domainInterproscan
IPR000727DomainTarget SNARE coiled-coil homology domainInterproscan
IPR026054FamilyNuclear pore complex proteinInterproscan
IPR006012Conserved_siteSyntaxin/epimorphin, conserved siteInterproscan
IPR010989Homologous_superfamilySNAREInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23193NUCLEAR PORE COMPLEX PROTEIN NUPInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005643Cellular Componentnuclear poreInterproscan
GO:0006405Biological ProcessRNA export from nucleusInterproscan
GO:0006606Biological Processprotein import into nucleusInterproscan
GO:0008139Molecular Functionnuclear localization sequence bindingInterproscan
GO:0017056Molecular Functionstructural constituent of nuclear poreInterproscan
GO:0005484Molecular FunctionSNAP receptor activityInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan

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