Gene detail

Detailed information of evm.model.Chr14.143 in Hemicorallium imperiale

Genomic Location: Chr14:2234422...2249241
NR annotation: CAB3980084.1, nibrin isoform X2 [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr14.143 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60934	Nibrin OS=Homo sapiens OX=9606 GN=NBN PE=1 SV=1
Q5RCV3	Nibrin OS=Pongo abelii OX=9601 GN=NBN PE=2 SV=2
Q9JIL9	Nibrin OS=Rattus norvegicus OX=10116 GN=Nbn PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004963 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00498 all species →	FHA	FHA domain	Family	Interproscan
PF08599 all species →	Nbs1_C	DNA damage repair protein Nbs1	Family	Interproscan
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF16508 all species →	NIBRIN_BRCT_II	Second BRCT domain on Nijmegen syndrome breakage protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040227 all species →	Family	Nibrin-related	Interproscan
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR043014 all species →	Homologous_superfamily	Nibrin, second BRCT domain superfamily	Interproscan
IPR013908 all species →	Domain	Nibrin, C-terminal	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR032429 all species →	Domain	Nibrin, second BRCT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12162 all species →	NIBRIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0007095 all species →	Biological Process	mitotic G2 DNA damage checkpoint signaling	Interproscan
GO:0030870 all species →	Cellular Component	Mre11 complex	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10867	NBN, NBS1; nibrin	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.