Detailed information of evm.model.Chr14.602 in Hemicorallium imperiale

Genomic Location: Chr14:7418020...7430071
NR annotation: XP_046841905.1, LOW QUALITY PROTEIN: DNA topoisomerase 1-like [Xenia sp. Carnegie-2017]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr14.602 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7YR26DNA topoisomerase 1 OS=Chlorocebus aethiops OX=9534 GN=TOP1 PE=2 SV=1
P11387DNA topoisomerase 1 OS=Homo sapiens OX=9606 GN=TOP1 PE=1 SV=2
Q04750DNA topoisomerase 1 OS=Mus musculus OX=10090 GN=Top1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005150 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01028
all species →		Topoisom_IEukaryotic DNA topoisomerase I, catalytic coreDomainInterproscan
PF14370
all species →		Topo_C_assocC-terminal topoisomerase domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014711
all species →		Homologous_superfamilyDNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-typeInterproscan
IPR014727
all species →		Homologous_superfamilyDNA topoisomerase I, catalytic core, alpha/beta subdomainInterproscan
IPR011010
all species →		Homologous_superfamilyDNA breaking-rejoining enzyme, catalytic coreInterproscan
IPR051062
all species →		FamilyDNA topoisomerase IBInterproscan
IPR018521
all species →		Active_siteDNA topoisomerase I, active siteInterproscan
IPR013500
all species →		DomainDNA topoisomerase I, catalytic core, eukaryotic-typeInterproscan
IPR013499
all species →		DomainDNA topoisomerase I, eukaryotic-typeInterproscan
IPR001631
all species →		FamilyDNA topoisomerase IInterproscan
IPR025834
all species →		DomainTopoisomerase I C-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10290
all species →		DNA TOPOISOMERASE IInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003917
all species →		Molecular FunctionDNA topoisomerase type I (single strand cut, ATP-independent) activityInterproscan
GO:0006265
all species →		Biological ProcessDNA topological changeInterproscan
GO:0005694
all species →		Cellular ComponentchromosomeInterproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0006260
all species →		Biological ProcessDNA replicationInterproscan
GO:0007059
all species →		Biological Processchromosome segregationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr14.602.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP