Detailed information of evm.model.Chr14.946 in Hemicorallium imperiale

Genomic Location: Chr14:16634626...16759229
NR annotation: XP_028408415.1, tRNA (uracil-5-)-methyltransferase homolog A-like isoform X1 [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr14.946 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8IZ69tRNA (uracil-5-)-methyltransferase homolog A OS=Homo sapiens OX=9606 GN=TRMT2A PE=1 SV=2
Q8BNV1tRNA (uracil-5-)-methyltransferase homolog A OS=Mus musculus OX=10090 GN=Trmt2a PE=1 SV=2
Q5RFM7tRNA (uracil-5-)-methyltransferase homolog B OS=Pongo abelii OX=9601 GN=TRMT2B PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003170 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076
all species →		RRM_1RNA recognition motifDomainInterproscan
PF13847
all species →		Methyltransf_31Methyltransferase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029063
all species →		Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR010280
all species →		Family(Uracil-5)-methyltransferase familyInterproscan
IPR000504
all species →		DomainRNA recognition motif domainInterproscan
IPR035979
all species →		Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR045850
all species →		FamilytRNA (uracil(54)-C(5))-methyltransferase, metazoa typeInterproscan
IPR012677
all species →		Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR025714
all species →		DomainMethyltransferase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45904
all species →		TRNA (URACIL-5-)-METHYLTRANSFERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006396
all species →		Biological ProcessRNA processingInterproscan
GO:0008173
all species →		Molecular FunctionRNA methyltransferase activityInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15332TRMT2A; tRNA (uracil-5-)-methyltransferaseEC:2.1.1.-
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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