Gene detail

Detailed information of evm.model.Chr15.281 in Hemicorallium imperiale

Genomic Location: Chr15:6888465...6908905
NR annotation: CAB4009553.1, roquin-1-like isoform X1 [Paramuricea clavata]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q6NUC6	Roquin-1 OS=Xenopus laevis OX=8355 GN=rc3h1 PE=2 SV=1
Q4VGL6	Roquin-1 OS=Mus musculus OX=10090 GN=Rc3h1 PE=1 SV=1
Q5TC82	Roquin-1 OS=Homo sapiens OX=9606 GN=RC3H1 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-CCCH
Ubiquitin Family	UBD\|Alpha-Helix\|MIU

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00642	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036855	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR052249	Family	Roquin domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13139	RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0000288	Biological Process	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0010494	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0035613	Molecular Function	RNA stem-loop binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan