Detailed information of evm.model.Chr15.287 in Hemicorallium imperiale

Genomic Location: Chr15:7103577...7108590
NR annotation: CAB3988967.1, 60S ribosomal L35 [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr15.287 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6ZWV7Large ribosomal subunit protein uL29 OS=Mus musculus OX=10090 GN=Rpl35 PE=1 SV=1
P17078Large ribosomal subunit protein uL29 OS=Rattus norvegicus OX=10116 GN=Rpl35 PE=1 SV=3
Q6UZF7Large ribosomal subunit protein uL29 OS=Hippocampus comes OX=109280 GN=rpl35 PE=2 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007240 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09138
all species →		Urm1Urm1 (Ubiquitin related modifier)DomainInterproscan
PF00831
all species →		Ribosomal_L29Ribosomal L29 proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001854
all species →		FamilyLarge ribosomal subunit protein uL29Interproscan
IPR015221
all species →		FamilyUbiquitin-related modifier 1Interproscan
IPR045059
all species →		FamilyLarge ribosomal subunit protein uL29, eukaryotesInterproscan
IPR036049
all species →		Homologous_superfamilyLarge ribosomal subunit protein uL29 superfamilyInterproscan
IPR018254
all species →		Conserved_siteLarge ribosomal subunit protein uL29, conserved siteInterproscan
IPR012675
all species →		Homologous_superfamilyBeta-grasp domain superfamilyInterproscan
IPR016155
all species →		Homologous_superfamilyMolybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-graspInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45722
all species →		60S RIBOSOMAL PROTEIN L35Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →		Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840
all species →		Cellular ComponentribosomeInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0034227
all species →		Biological ProcesstRNA thio-modificationInterproscan
GO:0000463
all species →		Biological Processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003729
all species →		Molecular FunctionmRNA bindingInterproscan
GO:0022625
all species →		Cellular Componentcytosolic large ribosomal subunitInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02918RP-L35e, RPL35; large subunit ribosomal protein L35e-Ribosomeko03011deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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