Detailed information of evm.model.Chr15.344 in Hemicorallium imperiale

Genomic Location: Chr15:7969980...7988208
NR annotation: XP_028394949.1, ubiquitin carboxyl-terminal hydrolase 33-like isoform X1 [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr15.344 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A0JM59Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus tropicalis OX=8364 GN=usp20 PE=2 SV=1
A6QNM7Ubiquitin carboxyl-terminal hydrolase 33 OS=Bos taurus OX=9913 GN=USP33 PE=2 SV=1
A5PN09Ubiquitin carboxyl-terminal hydrolase 20 OS=Danio rerio OX=7955 GN=usp20 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003770 (this species only)
Ubiquitin familyDUB|USP|USP · all ubiquitin genes in this species
Ubiquitin familyUBD|ZnF|ZnF_UBP · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02148
all species →		zf-UBPZn-finger in ubiquitin-hydrolases and other proteinDomainInterproscan
PF00443
all species →		UCHUbiquitin carboxyl-terminal hydrolaseFamilyInterproscan
PF06337
all species →		DUSPDUSP domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR006615
all species →		DomainPeptidase C19, ubiquitin-specific peptidase, DUSP domainInterproscan
IPR038765
all species →		Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR001607
all species →		DomainZinc finger, UBP-typeInterproscan
IPR035927
all species →		Homologous_superfamilyDUSP-like superfamilyInterproscan
IPR001394
all species →		DomainPeptidase C19, ubiquitin carboxyl-terminal hydrolaseInterproscan
IPR018200
all species →		Conserved_siteUbiquitin specific protease, conserved siteInterproscan
IPR028889
all species →		DomainUbiquitin specific protease domainInterproscan
IPR050185
all species →		FamilyUbiquitin carboxyl-terminal hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21646
all species →		UBIQUITIN CARBOXYL-TERMINAL HYDROLASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004843
all species →		Molecular Functioncysteine-type deubiquitinase activityInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0016579
all species →		Biological Processprotein deubiquitinationInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11848USP20_33; ubiquitin carboxyl-terminal hydrolase 20/33EC:3.4.19.12
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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