Gene detail

Detailed information of evm.model.Chr15.383 in Hemicorallium imperiale

Genomic Location: Chr15:8562102...8564079
NR annotation: CAB3980829.1, 40S ribosomal S18 [Paramuricea clavata]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr15.383 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IT98	Small ribosomal subunit protein uS13 OS=Argopecten irradians OX=31199 GN=RPS18 PE=2 SV=1
Q8ISP0	Small ribosomal subunit protein uS13 OS=Branchiostoma belcheri OX=7741 GN=RPS18 PE=2 SV=1
Q8JGS9	Small ribosomal subunit protein uS13 OS=Danio rerio OX=7955 GN=rps18 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006777 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00416 all species →	Ribosomal_S13	Ribosomal protein S13/S18	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010979 all species →	Homologous_superfamily	Small ribosomal subunit protein uS13-like, H2TH	Interproscan
IPR018269 all species →	Conserved_site	Small ribosomal subunit protein uS13, conserved site	Interproscan
IPR027437 all species →	Homologous_superfamily	Small ribosomal subunit protein uS13, C-terminal	Interproscan
IPR001892 all species →	Family	Small ribosomal subunit protein uS13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10871 all species →	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02964	RP-S18e, RPS18; small subunit ribosomal protein S18e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.