Detailed information of evm.model.Chr15.402 in Hemicorallium imperiale

Genomic Location: Chr15:8800606...8811678
NR annotation: XP_028394633.1, protein SMG7-like [Dendronephthya gigantea]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr15.402 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5RJH6Nonsense-mediated mRNA decay factor SMG7 OS=Mus musculus OX=10090 GN=Smg7 PE=2 SV=1
Q92540Nonsense-mediated mRNA decay factor SMG7 OS=Homo sapiens OX=9606 GN=SMG7 PE=1 SV=2
Q1LVF3Nonsense-mediated mRNA decay factor SMG7 OS=Danio rerio OX=7955 GN=smg7 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005735 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10373
all species →		EST1_DNA_bindEst1 DNA/RNA binding domainRepeatInterproscan
PF10374
all species →		EST1Telomerase activating protein Est1RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018834
all species →		DomainDNA/RNA-binding domain, Est1-typeInterproscan
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR019458
all species →		DomainTelomerase activating protein Est1-like, N-terminalInterproscan
IPR045153
all species →		FamilyEst1/Ebs1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15696
all species →		SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000184
all species →		Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0005697
all species →		Cellular Componenttelomerase holoenzyme complexInterproscan
GO:0042162
all species →		Molecular Functiontelomeric DNA bindingInterproscan
GO:0070034
all species →		Molecular Functiontelomerase RNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr15.402.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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