Detailed information of evm.model.Chr15.452 in Hemicorallium imperiale

Genomic Location: Chr15:9340081...9376070
NR annotation: XP_028395012.1, choline transporter-like protein 4 [Dendronephthya gigantea]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr15.452 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6GN42Choline transporter-like protein 4 OS=Xenopus laevis OX=8355 GN=slc44a4 PE=2 SV=1
Q6IP59Choline transporter-like protein 2 OS=Xenopus laevis OX=8355 GN=slc44a2 PE=2 SV=1
B4F795Choline transporter-like protein 2 OS=Rattus norvegicus OX=10116 GN=Slc44a2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001222 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04515
all species →
Choline_transpoPlasma-membrane choline transporterFamilyInterproscan
PF12931
all species →
Sec16_CSec23-binding domain of Sec16DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007603
all species →
FamilyCholine transporter-likeInterproscan
IPR024298
all species →
DomainAncestral coatomer element 1, Sec16/Sec31Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12385
all species →
CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0022857
all species →
Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085
all species →
Biological Processtransmembrane transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K04834SCN2A, NAV1.2; voltage-gated sodium channel type II alpha-Ion channelsko04040deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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