Detailed information of evm.model.Chr16.104 in Hemicorallium imperiale

Genomic Location: Chr16:1764840...1780068
NR annotation: CAB4006070.1, fascin-2 [Paramuricea clavata]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr16.104 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3UV71Protein O-mannosyl-transferase TMTC1 OS=Mus musculus OX=10090 GN=Tmtc1 PE=2 SV=2
Q8IUR5Protein O-mannosyl-transferase TMTC1 OS=Homo sapiens OX=9606 GN=TMTC1 PE=1 SV=3
Q61553Fascin OS=Mus musculus OX=10090 GN=Fscn1 PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007762 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07719
all species →		TPR_2Tetratricopeptide repeatRepeatInterproscan
PF13432
all species →		TPR_16Tetratricopeptide repeatRepeatInterproscan
PF13181
all species →		TPR_8Tetratricopeptide repeatRepeatInterproscan
PF13414
all species →		TPR_11TPR repeatRepeatInterproscan
PF08409
all species →		TMTC_DUF1736Protein O-mannosyl-transferase TMTC, DUF1736FamilyInterproscan
PF06268
all species →		FascinFascin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013105
all species →		RepeatTetratricopeptide repeat 2Interproscan
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR019734
all species →		RepeatTetratricopeptide repeatInterproscan
IPR022768
all species →		DomainFascin domainInterproscan
IPR008999
all species →		Homologous_superfamilyActin-crosslinkingInterproscan
IPR013618
all species →		DomainProtein O-mannosyl-transferase TMTC, DUF1736Interproscan
IPR052943
all species →		FamilyTMTC O-mannosyl-transferaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44809
all species →		-Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0030674
all species →		Molecular Functionprotein-macromolecule adaptor activityInterproscan
GO:0051015
all species →		Molecular Functionactin filament bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr16.104.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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