Detailed information of evm.model.Chr16.173 in Hemicorallium imperiale

Genomic Location: Chr16:2886340...2901943
NR annotation: CAB3980536.1, transportin-3-like isoform X2 [Paramuricea clavata]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr16.173 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6P2B1Transportin-3 OS=Mus musculus OX=10090 GN=Tnpo3 PE=1 SV=1
Q9Y5L0Transportin-3 OS=Homo sapiens OX=9606 GN=TNPO3 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006302 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03810
all species →		IBN_NImportin-beta N-terminal domainRepeatInterproscan
PF08389
all species →		Xpo1Exportin 1-like proteinRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001494
all species →		DomainImportin-beta, N-terminal domainInterproscan
IPR013598
all species →		DomainExportin-1/Importin-beta-likeInterproscan
IPR011989
all species →		Homologous_superfamilyArmadillo-like helicalInterproscan
IPR051345
all species →		FamilyImportin beta-like nuclear transport receptorsInterproscan
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12363
all species →		TRANSPORTIN 3 AND IMPORTIN 13Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006886
all species →		Biological Processintracellular protein transportInterproscan
GO:0031267
all species →		Molecular Functionsmall GTPase bindingInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006606
all species →		Biological Processprotein import into nucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15436TRPO3, MTR10; transportin-3-Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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