Detailed information of evm.model.Chr16.231 in Hemicorallium imperiale

Genomic Location: Chr16:3762285...3776221
NR annotation: XP_028400085.1, uncharacterized protein LOC114523387 [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr16.231 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004293 (this species only)
Transcription factor familyCSD · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00313
all species →		CSD'Cold-shock' DNA-binding domainDomainInterproscan
PF02198
all species →		SAM_PNTSterile alpha motif (SAM)/Pointed domainDomainInterproscan
PF04326
all species →		SLFN_AlbA_2Schlafen, AlbA_2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012340
all species →		Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR011129
all species →		DomainCold shock domainInterproscan
IPR013761
all species →		Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR002059
all species →		DomainCold-shock protein, DNA-bindingInterproscan
IPR003118
all species →		DomainPointed domainInterproscan
IPR038461
all species →		Homologous_superfamilySchlafen, AlbA_2 domain superfamilyInterproscan
IPR029071
all species →		Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR007421
all species →		DomainSchlafen, AlbA_2 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12913
all species →		UNR PROTEIN N-RAS UPSTREAM GENE PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0043565
all species →		Molecular Functionsequence-specific DNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr16.231.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP