Detailed information of evm.model.Chr16.27 in Hemicorallium imperiale

Genomic Location: Chr16:699027...718457
NR annotation: XP_028397342.1, protein PAT1 homolog 1-like isoform X1 [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr16.27 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A2RRV3Protein PAT1 homolog 1 OS=Danio rerio OX=7955 GN=patl1 PE=1 SV=1
Q86TB9Protein PAT1 homolog 1 OS=Homo sapiens OX=9606 GN=PATL1 PE=1 SV=2
Q3TC46Protein PAT1 homolog 1 OS=Mus musculus OX=10090 GN=Patl1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004039 (this species only)

 Pfam domain
No Pfam domain signature was detected for evm.model.Chr16.27. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR039900
all species →		FamilyPat1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21551
all species →		TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000290
all species →		Biological Processdeadenylation-dependent decapping of nuclear-transcribed mRNAInterproscan
GO:0000932
all species →		Cellular ComponentP-bodyInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0033962
all species →		Biological ProcessP-body assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12617PATL1, PAT1; DNA topoisomerase 2-associated protein PAT1-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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