Genomic Location: Chr16:5200585...5211046
NR annotation: CAB4023011.1, WD repeat domain phosphoinositide-interacting 4-like [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Chr16.327 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q7ZUX3 | WD repeat domain phosphoinositide-interacting protein 4 OS=Danio rerio OX=7955 GN=wdr45 PE=2 SV=1 |
| Q9Y484 | WD repeat domain phosphoinositide-interacting protein 4 OS=Homo sapiens OX=9606 GN=WDR45 PE=1 SV=1 |
| Q91VM3 | WD repeat domain phosphoinositide-interacting protein 4 OS=Mus musculus OX=10090 GN=Wdr45 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001994 (this species only) · gene tree & orthology |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21032 all species → | PROPPIN | PROPPIN | Repeat | Interproscan |
| PF05405 all species → | Mt_ATP-synt_B | Mitochondrial ATP synthase B chain precursor (ATP-synt_B) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR048720 all species → | Family | PROPPIN | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR008688 all species → | Family | ATP synthase, F0 complex, subunit B/MI25 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11227 all species → | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0000276 all species → | Cellular Component | obsolete mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) | Interproscan |
| GO:0015078 all species → | Molecular Function | proton transmembrane transporter activity | Interproscan |
| GO:0015986 all species → | Biological Process | proton motive force-driven ATP synthesis | Interproscan |
| GO:0000422 all species → | Biological Process | autophagy of mitochondrion | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006497 all species → | Biological Process | protein lipidation | Interproscan |
| GO:0019898 all species → | Cellular Component | extrinsic component of membrane | Interproscan |
| GO:0032266 all species → | Molecular Function | phosphatidylinositol-3-phosphate binding | Interproscan |
| GO:0034045 all species → | Cellular Component | phagophore assembly site membrane | Interproscan |
| GO:0034497 all species → | Biological Process | protein localization to phagophore assembly site | Interproscan |
| GO:0044804 all species → | Biological Process | nucleophagy | Interproscan |
| GO:0080025 all species → | Molecular Function | phosphatidylinositol-3,5-bisphosphate binding | Interproscan |
evm.model.Chr16.327.Genes whose expression across the transcriptome samples of Hemicorallium imperiale tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hemicorallium imperiale, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
