Detailed information of evm.model.Chr16.375 in Hemicorallium imperiale

Genomic Location: Chr16:6822379...6824598
NR annotation: CAB3990598.1, 60S ribosomal L44 [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr16.375 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P90702Large ribosomal subunit protein eL42 OS=Brugia malayi OX=6279 GN=rpl-44 PE=3 SV=3
P48166Large ribosomal subunit protein eL42 OS=Caenorhabditis elegans OX=6239 GN=rpl-36A PE=1 SV=2
P0CX27Large ribosomal subunit protein eL42A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL42A PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007639 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00935
all species →		Ribosomal_L44Ribosomal protein L44FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000552
all species →		FamilyLarge ribosomal subunit protein eL42Interproscan
IPR053708
all species →		Homologous_superfamilyEukaryotic Ribosomal Large Subunit eL42Interproscan
IPR011332
all species →		Homologous_superfamilyZinc-binding ribosomal proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10369
all species →		60S RIBOSOMAL PROTEIN L36A/L44Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →		Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840
all species →		Cellular ComponentribosomeInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan
GO:0022625
all species →		Cellular Componentcytosolic large ribosomal subunitInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02929RP-L44e, RPL44; large subunit ribosomal protein L44e-Ribosomeko03011deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP