Genomic Location: Chr16:7664165...7692489
NR annotation: XP_028412397.1, glutamate receptor ionotropic, NMDA 1-like isoform X1 [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Chr16.402 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A0A1L8F5J9 | Glutamate receptor ionotropic, NMDA 1 OS=Xenopus laevis OX=8355 GN=grin1 PE=1 SV=1 |
| P35438 | Glutamate receptor ionotropic, NMDA 1 OS=Mus musculus OX=10090 GN=Grin1 PE=1 SV=1 |
| P35439 | Glutamate receptor ionotropic, NMDA 1 OS=Rattus norvegicus OX=10116 GN=Grin1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000938 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10613 all species → | Lig_chan-Glu_bd | Ligated ion channel L-glutamate- and glycine-binding site | Domain | Interproscan |
| PF00497 all species → | SBP_bac_3 | Bacterial extracellular solute-binding proteins, family 3 | Domain | Interproscan |
| PF10562 all species → | CaM_bdg_C0 | Calmodulin-binding domain C0 of NMDA receptor NR1 subunit | Domain | Interproscan |
| PF00060 all species → | Lig_chan | Ligand-gated ion channel | Family | Interproscan |
| PF01094 all species → | ANF_receptor | Receptor family ligand binding region | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019594 all species → | Domain | Ionotropic glutamate receptor, L-glutamate and glycine-binding domain | Interproscan |
| IPR001508 all species → | Family | Ionotropic glutamate receptor, metazoa | Interproscan |
| IPR001320 all species → | Domain | Ionotropic glutamate receptor, C-terminal | Interproscan |
| IPR001638 all species → | Domain | Solute-binding protein family 3/N-terminal domain of MltF | Interproscan |
| IPR018882 all species → | Domain | Calmodulin-binding domain C0, NMDA receptor, NR1 subunit | Interproscan |
| IPR028082 all species → | Homologous_superfamily | Periplasmic binding protein-like I | Interproscan |
| IPR001828 all species → | Domain | Receptor, ligand binding region | Interproscan |
| IPR015683 all species → | Family | Ionotropic glutamate receptor | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR18966 all species → | IONOTROPIC GLUTAMATE RECEPTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0015276 all species → | Molecular Function | ligand-gated monoatomic ion channel activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005216 all species → | Molecular Function | monoatomic ion channel activity | Interproscan |
| GO:0006811 all species → | Biological Process | monoatomic ion transport | Interproscan |
| GO:0038023 all species → | Molecular Function | signaling receptor activity | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K05208 | GRIN1; glutamate receptor ionotropic, NMDA 1 | - | Ion channels | ko04040 | deepkoala |
Genes whose expression across the transcriptome samples of Hemicorallium imperiale tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hemicorallium imperiale, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
