Gene detail

Detailed information of evm.model.Chr16.727 in Hemicorallium imperiale

Genomic Location: Chr16:19285678...19305986
NR annotation: XP_028397288.1, 26S proteasome non-ATPase regulatory subunit 13-like [Dendronephthya gigantea]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr16.727 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P84169	26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus OX=9031 GN=PSMD13 PE=1 SV=1
Q9UNM6	26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens OX=9606 GN=PSMD13 PE=1 SV=2
Q5E964	26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus OX=9913 GN=PSMD13 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007337 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18261 all species →	Rpn9_C	Rpn9 C-terminal helix	Family	Interproscan
PF01399 all species →	PCI	PCI domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR040798 all species →	Domain	Rpn9, C-terminal helix	Interproscan
IPR035298 all species →	Family	26S Proteasome non-ATPase regulatory subunit 13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10539 all species →	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0008541 all species →	Cellular Component	proteasome regulatory particle, lid subcomplex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03039	PSMD13, RPN9; 26S proteasome regulatory subunit N9	-	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.