Gene detail

Detailed information of evm.model.Chr17.190 in Hemicorallium imperiale

Genomic Location: Chr17:3772333...3978823
NR annotation: XP_028414335.1, transcription initiation factor TFIID subunit 2-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q5ZIT8	Transcription initiation factor TFIID subunit 2 OS=Gallus gallus OX=9031 GN=TAF2 PE=2 SV=1
Q32PW3	Transcription initiation factor TFIID subunit 2 OS=Danio rerio OX=7955 GN=taf2 PE=2 SV=2
Q6P1X5	Transcription initiation factor TFIID subunit 2 OS=Homo sapiens OX=9606 GN=TAF2 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01433	Peptidase_M1	Peptidase family M1 domain	Domain	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF13361	UvrD_C	UvrD-like helicase C-terminal domain	Domain	Interproscan
PF00580	UvrD-helicase	UvrD/REP helicase N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027268	Homologous_superfamily	Peptidase M4/M1, CTD superfamily	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014782	Domain	Peptidase M1, membrane alanine aminopeptidase	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR014017	Domain	UvrD-like DNA helicase, C-terminal	Interproscan
IPR042097	Homologous_superfamily	Aminopeptidase N-like , N-terminal domain superfamliy	Interproscan
IPR037813	Family	Transcription initiation factor TFIID subunit 2	Interproscan
IPR014016	Domain	UvrD-like helicase, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15137	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan